IMC Version Up History 7

Last Modified: 2018-06-02 (土) 21:20:47


7.12 April 15th, 2018

  1. Bug # 2188: A bug in which values ​​larger than N are displayed when displaying feature position information that cross N, 1 has been resolved.
  2. Bug # 2189: The menus displayed by the right click of the specified range may be different may be solved.
  3. Spec # 2187: The function to search the optimal primer which amplifies the specified range from already registered primer was added.
  4. Spec # 2190: A function to replace CDS so that it is not disconnected by a specific restriction enzyme has been added.
    • Based on the specified codon frequency table, codons to be replaced are selected with high frequency of use.
    • The substituted codon is saved in Qualifier / modified_base =.
  5. Spec # 2186: Changed that LGRM automatically saves Multiple CSV file output.
    • In the past, a dialog was displayed at the end of the analysis and asked whether to save it or not.
    • After correction this time, it asked whether to save before execution, it was changed so that it will be automatically saved according to the specification at the time of execution, and finished.

7.11 February 21st, 2018

  1. Fixed a bug where mismatch list of LGR Map stays open even if cancellation of current array designation is canceled.
  2. A bug in which array names can not be copied or the current folder can not be moved by creating directory names similar to the same hierarchy has been fixed.
    • For example, if c: \ seq is the root directory and a directory called E. coli and E. col. O 157 is created under it, you can not copy the array from E. coli to E. coli O157 by drag & drop.
    • E. coli.O 157 can not be the current directory after making E. coli the current directory.
  3. A function to display the matching bases with Main reference genome on LGRM Multiple CSV file output has been added.

7.10 February 16th, 2018

  1. A bug that Primer Feature Position shifted by 1 base has been fixed.
    • When registering primers as features on the map with Insert New Feature, they were registered with a shift of one base.
  2. A function to sort file names of the directory tree has been added.
    • Right-click on the current directory → Sort Filename → Sort is performed in ascending / descending order.
    • Only the current directory can be sorted.

7.09 February 13th, 2018

  1. A bug that caused an error when executing LGRM has been fixed.
    • An error occurred when CDS existed at (N, 1) position.
  2. When copying from Main Current Folder to Reference Current Folder, the message when the same array already exists has been changed.

7.08 January 24th, 2018

  1. It is now possible to combine LGRM continuous execution and execution results.
  2. A bug in which the amino acid sequence display of LGRM is shifted has been fixed.

7.07 January 16th, 2018

  1. When LGRM runs it generates a copy of the underlying genomic sequence and LGRM runs on that copy. For this reason, the Lismal List of LGRM is kept on the copy side, and the LGRM Mismatch List Window is no longer displayed when reloading the original genomic sequence as in the past.
  2. A bug in which Frame Lane is not displayed has been fixed.
  3. DotPlot's XY ratio maintenance zoom can now be operated with the mouse wheel.

7.06 January 12th, 2018

  1. The following functions can be executed from "Codon Position List Window" which can be started from Codon Usage Window.
    • You can register the selected codon position as a new feature. At this time, you can select any feature key.
    • You can replace the selected codon with another codon (this codon must be registered as a feature in advance). In addition, in the feature - / note =, the codon before substitution is recorded.
  2. A header was added to the CSV file output from the Local Genome Rearrangement Map (LGRM).
  3. The problem that the Local Genome Rearrangement Map (LGRM) freezes during processing has been solved.
  4. When the intron is included in the CDS, the display position of the amino acid displayed in the sequence lane shifted (after the second exon) the problem was solved.

7.05 December 21st, 2017

  1. A bug that the display position on the reverse side is shifted by 1 base in the on sequence display of Feature has been fixed.

7.04 December 8th, 2017

  1. A window for displaying the list of its occurrence positions from each codon of Codon Usage Window has been added.
    Display items
    genome position, genename, Product etc.,
    • Clicking on one line in that list moves you to the appropriate position in the feature map.
    • Also at that time, highlight the corresponding codon in Sequence Lane.

7.03 December 6th, 2017

  1. A bug that prevented you from moving from the homology search results to the homology domain has been fixed.
    • Click on the list to move to the corresponding position and flip the homology area with a light blue color.

7.01 November 26th, 2017

  1. Multiple Exon CDS can now be registered directly from Frame Lane 's Stop Codon absent area (s).
  2. Cloning menu composition has been changed.
  3. A bug that freezes at the end of file loading has been resolved.
  4. The zoom out function has been improved.
  5. By selecting the Primer feature of the Feature Map, you can now register the primer by right clicking on the mouse.
  6. Feature Layout Style can be saved for each style.
  7. In the Search Unique Region function, clicking a list now displays the feature map of that position.
  8. The name of the button whose Default Style is currently used Feature Layout Style has been changed from "Default" to "Save the Style as Default".
  9. The default value of Outside Primer Search Range of Primer Design Parameter has been changed.
  10. Fixed a mistake in the unit of Primer Design Parameter.
  11. "Scope capture" has been added to the screen capture function.
  12. The auto generation serial number which conventionally generated too long name was shortened. It is automatically set to the number of consecutive serial number saved + number of files to be generated.
  13. The preservation and application function of Feature Setting foul which was difficult to understand in the past was improved.
  14. You can now specify all feature keys on sequence lane display.
  15. Fixed a bug that could not capture the window on subdisplay when using extended discussion.
  16. Conventionally, the IMC Version name, which was represented by three numerical values, such as 6.0.44, has been changed to two numerical expressions, such as 7.01.
  17. We unveiled a tool group that was not officially released.

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Last-modified: 2018-06-02 (土) 21:20:47 (17d)