GT Version 3.0 Version Up History

Last Modified: 2018-05-30 (水) 13:26:08
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3.0.72 2017|10|31

  1. The problem which the error generates during Assembly execution is solved.
  2. The problem which the error generates during SLIDESORTmapping execution is solved.

3.0.71 2017|10|16

  1. IMC Version 6.0.44 is supported.

3.0.70 2017|08|01

  1. The bug of de novo Assembly is corrected.

3.0.69 2017|07|14

  1. IMC Version 6.0.42is supported.

3.0.68 2017|05|25

  1. The reference approach to the BAM file is improved.

3.0.67 2017|05|18

  1. A defect about the designation of Unmapped Region List is corrected.

3.0.66 2017|05|15

  1. The bug which can not do the FastA file power of the Consensus arrangement is corrected.
  2. IMC Version 6.0.41 is supported.

3.0.65 2017|04|27

  1. The defect which the memory storage configuration content when installing in the early stage isn't reflected in is corrected.
  2. The defect which becomes an error when executing a memory storage configuration ( Memory Setting ) from the program menu is corrected.
  3. IMC Version 6.0.40 is supported.

3.0.64 2017|01|30

  1. IMC Version 6.0.37 supported.

3.0.63 2016|12|21

  1. IMC Version 6.0.36 supported.

3.0.62 2016|09|16

  1. Velvet Assembly action is improved.
  2. The function to output the Read arrangement which didn't come in Mapping in one file, gathering isn't processed right.
  3. A defect about the Mapping action is corrected.
  4. Conversion tool Split pairedend ( FASTA|FASTQ ) is incorporated.
  5. Explorer is started up by the click of the Show Directory menu button in the Windows atmosphere but the defect where a corresponding paper file isn't displayed is solved.

3.0.61 2016|09|09

  1. The problem which doesn't start up even if it clicks the activation icon of the desktop in MACOSX is solved.

3.0.60 2016|09|09

IMC Version 6.0.31 supported 6.0.31.

3.0.59 2016|08|18

  1. File Manager is implemented.

3.0.58 2016|08|09

  1. Locate Nonhomologous Recombination Site action is added.

3.0.57 2016|07|15

  1. The trouble that the network drive gets out of sight at the Windows edition is solved.

3.0.56 2016|04|22

  1. Filtering action of DisagreementList? is improved.
    • Filtering by the choice - the unselection in the check box
Show SNPs
The designation of the data which contains Feature information about SNP / it is hidden. ( But, it is only when an information about SNPs is contained on the side of the bibiographical reference arrangement ).
Show Lower Bases
The designation of the data of the lower case - the base of the consensus sequence is hidden.
Show Gaps
The data display that an air-gap is contained in the base to compare by the insert - the absentia and so on - it is hidden.
  1. The bug which occurred when choosing a Mus after sort or filtering by the various lower-platen is corrected.
  2. A bug about the SRA to FASTQ conversion tool is corrected.

3.0.55 2016|04|20

  1. A bug about the air-gap insert in LAST Mapping is corrected.

3.0.54 2016|04|12

  1. The bug which can not display Mapping result is corrected.
  2. The bug which the automatic installation from Check Latest Version fails in in Windows10 is corrected.

3.0.53 2016|03|23

  1. Default Parameter is adjusted for the air-gap to be difficult to insert in the side of the bibiographical reference arrangement in LAST Mapping.
  2. The bug that LAST Mapping option ( LAST Parameter Settings ) DIALOG isn't displayed right in MacOSX is corrected.
  3. The bug where the Parameter Settings DIALOG of Velvet|Oases isn't displayed right from the Assembly option setting is corrected.

3.0.52 2016|03|03

  1. The following column article is displayed by the list to confirm whether or not the area to have had a mapping result mapped to another Feature boiling gamut is as which.
    1. Feature Key
    2. Consensus Position
    3. Start
    4. End
    5. SegLen?
    6. Strand
    7. MappedLen?
    8. MappedLen? ( The % )
    9. Cov.Max
    10. Cov.Avg

3.0.51 2016|02|12

  1. The bug of the Show Reference action of Alignment Viewer is corrected.

3.0.50 2016|02|12

  1. Reference Read Error of Velvet Assembler is canceled.

3.0.49 2016|02|05

  1. The bug that Reference display isn't made of bundled IMC is corrected.

3.0.48 2015|12|22

  1. CBRC LAST is raised by the version.

3.0.47 2015|11|18

  1. The birth of the arrangement load error is canceled by the bundled IMC.

3.0.46 2015|11|05

  1. The bug by which Mapping Tool can not be changed is corrected.

3.0.45 2015|10|01

  1. BAM Indexing tool is implemented.

3.0.44 2015|08|16

IMC Version 6.0.1 supported.

3.0.43 2015|05|27

  1. The SAM to BAM conversion tool and the subsystem-action-message
  2. The Splitter tool becomes improved and coming to be compatible with the multi-thread
  3. The bug which can not import the BAM file which more than one Reference is subscribed to is corrected.

3.0.42 2015|05|18

  1. SAM to BAM conversion tool is implemented.
  2. The bug which the mapping result doesn't change to even if it changes Mapping Policy is corrected.

3.0.41 2015|05|08

  1. The setting became possible particularly respectively in the drawing drawing scale of the profile of Navigation Pane and Profile Pane of Profile Viewer.
  2. A head of the page blank in the drawing scale display area of Navigation Pane is set, being a little narrow.
  3. The bug which isn't drawn right is corrected when specifying a logarithmic scale by Profile Viewer.

3.0.40 2015|05|01

  1. The setting became possible particularly respectively in the drawing drawing scale of the profile of Navigation Pane and Profile Pane of Profile Viewer.
  2. The sample name became able to be displayed in Profile Pane of Profile Viewer.
  3. The wooden slider adjustment approach of the alignment viewer and the profile viewer is changed.
  4. The bug which becomes an error when trying to delete the register article of Insert legnths of pairedend of Velvet|Oases is corrected.
  5. In Profile Pane of Profile Viewer, the bug that the eaves soffit of the Profile diagramatic chart most below, is corrected.
  6. " Stop to Stop " which is a new addendum lane in Feature Layout Style of the IMC The bug that a lane isn't displayed in Feature Pane of GT is corrected.

3.0.39 2015|04|17

  1. The node name when creating Analysis Node became able to be changed.
  2. The bug that a node isn't updated even if it does the import of the AFG file from the project tree node is corrected.
  3. The bug which can choose only CBRC LAST is corrected when trying to do a mapping analysis.
  4. The bug which can not resize the configuration DIALOG faceplate of the LAST mapping option is corrected.
  5. The bug by which the parameter in the air-gap can not be set with the configuration DIALOG faceplate of the LAST mapping option is corrected.
  6. The bug which the content of remarks ( Note ) which were inputted to the analysis node name of the Oases assembly when specifying NGS file isn't reflected in is corrected.

3.0.38 2015|04|10

  1. The early stage parameter value of the mapping execute-option is adjusted.
  2. The correspondence to the defect of SLIDESORT completed.

3.0.37 2015|04|03

  1. It is changed to arrange the mapping association article of the Analysis lower-platen column earlier ( the left ).
  2. The bug with which the bibiographical reference genom arrangement and the consensus sequence shift of Consensus Pane is corrected.
  3. The problem which the PairedEnd? Mapping error generates is solved.
  4. No drawn bug is corrected by the gamut drawing chromosome-segment of AlignmentViewer? Navigation Pane.
  5. The bug which doesn't jump to the geometry which corresponds even if it clicks the lower-platen designation article of Gap [ IN|DEL ] List with the Mus is corrected.

3.0.36 2015|03|26

  1. Convert XSQ to FASTQ execute-option fixed value is changed.
  2. Analysis lower-platen column article is added.
  3. When regular edition IMC is started up, the bug which can not start up GT bundling edition IMC is corrected.

3.0.35 2015|03|23

  1. The PairedEnd? mapping error which occurred at the Mac edition is solved.

3.0.34 2015|03|20

  1. The execution error of Gap [ IN|DEL ] List, Ummapped Region List is solved.

3.0.33 March 13th, 2015

  1. The action of GT for the command line execution was implemented.
  2. The bug where GT can not be launched by the desktop icon click when version up to Java8 was fixed.

3.0.32 March 4th, 2015

  1. A bug about Peak Detection was fixed.
  2. A bug about the internal file disposal was fixed.

3.0.31 February 26th, 2015

  1. The bug of the error about the LAST mapping was solved.
  2. The bug which the Main Window is displayed in the different location from the window location at the last time operation was solved.
  3. The bug which the process log history log file can not be shown in the Linux version was solved.
  4. The SamTools? library new version is supported.

3.0.30 Not Released

3.0.29 February 19th, 2015

  1. The drawing speed of Profile Viewer was improved.

3.0.28 February 12th, 2015

  1. One of the arithmetic profile can be displayed as the Local Navigation Profile.

3.0.27 February 7th, 2015

  1. The center line of the arithmetic profile was implemented.

3.0.26 February 4th, 2015

  1. The arithmetic profile was implemented.
  2. A screen shot capturing function on the selected pane was implemented.

3.0.25 January 26th, 2015

  1. The bug of the RPKM value calculation is fixed.
  2. The nomenclature method of the group BAM file for the Profile Viewer was changed.

3.0.24 January, 22nd, 2015

  1. A screen shot function was implemented.
  2. The bug of the automatic update function was fixed.
  3. The bug which "Out of Memory" error occurs although enough memory space is available was fixed.

3.0.23 January 15th, 2015

  1. The bug that nothing would executed even if "Jump" button or that of menu of the "Profile Viewer" is clicked, was fixed.
  2. The number of the reads which was mapped on 3'UTR of a feature is jointly counted in addition to the number of the reads which was mapped on the feature in the as a new total read count column of "Feature Expression List". The new column for the corresponding value for the RPKM value, too, was added.
  3. An icon ( eyeball ) for display or hide the toolbox was arranged in the fixed position of the left end.

3.0.22 January 8th, 2015

  1. A bug about "Option Settings" / "Editing Dialog of Feature Layout Style" was fixed.
  2. In case of "Separately Mapping", the bug that the analysis node name differs with the content of the analysis result was fixed.
  3. An area selection is displayed to understand the area in another pane at the time of the "Feature Selection" in "Feature Pane" of "Alignment Viewer".
  4. A medium access control address assignment at the time of a fixed licence file creation was improved.

3.0.21 December 24th, 2014

  1. The bug which causes a mapping error was corrected.
  2. "Feature Expression List" was improved.
  3. The execution of "Export Coverage Depth" from "Analysis Node" of "Project Tree" was implemented.
  4. In the progress message,the elapsed time of the whole process and of the current process became displayed.

3.0.20 December 12th, 2014

  1. The bug that log scale display isn't shown correctly in the "Profile Viewer" / "Alignment Viewer" was corrected.
  2. The bug which can not do the GPFF reference of "Homology Search" result-item in the "Feature Pane" of "Alignment Viewer" was corrected.
  3. An arrow head size of the scroll buttons on either side of "Profile Viewer" / "Alignment Viewer" was changed.
  4. The default value of of "Draw Area Order" of "Profile Viewer" was changed.

3.0.19 December 11th, 2014

  1. The bug that "LAST Mapping" isn't defaultly chosen was corrected.
  2. The scaffold separation tool "S2D" became available.
  3. "Export Probe / Array" was improved.
  4. The configuration option parameter of the DEMO data creation for "Profile Viewer" was implemented.

3.0.18 December 9th, 2014

  1. A glitch about DEMO data was corrected.
  2. The Initialization menu of the "Project Tree Node" was corrected.

3.0.17 December 4th, 2014

  1. The option that "AFG file Import" process automatically follows after "Assembly" process was implemented.
  2. The bug which becomes an error in the end of the "Mapping" process was fixed.
  3. The bug that "Merge FastA / FastQ" becomes an error was fixed.
  4. The bug that "Convert SXQ to FastQ" becomes an error was fixed.

3.0.16 November 28th, 2014

  1. The "Data Conversion" disposal of preprocess to "Alignment Viewer" became automatically executed after "Mapping".
  2. "Project / Reference / Analysis Pane" of "Project Window" became able to be un-docked from the Main Window.
  3. The bug that the automatic version up process doesn't work was fixed.
  4. The bug that a message, that "Data Conversion is necessary" is displayed in "Alignment Viewer" was fixed.
  5. The bug where the the same profile names are displayed even if different files are loaded in "Profile Viewer" was fixed.

3.0.15 November 21st, 2014

  1. The bug with which the reference genome sequence and the consensus sequence on "Consensus Pane" was fixed.
  2. The RPKM value computed by "All Mapped Reads on CDS" became available.

3.0.14 November 20th, 2014

  1. "Elapsed Time" became displayed in "Mapping Progress Message".
  2. The error which occurs at the time of the data conversion in "Profile Viewer" was solved.

3.0.13 November 14th, 2014

  1. An log scale display was added to the "Coverage Depth" display of "Alignment Viewer" and "Profile Viewer".
  2. The error problem which occurs in the "Feature Expression List" execution was solved.

3.0.12 November 13th, 2014

  1. The default parameters of the "Mapping" process was changed.
  2. The bug that a mouse right-clicking menu on "Navigation Pane" isn't displayed in "Profile Viewer" was fixed.
  3. A problem about LookAndFeel? in the Linux was solved.
  4. The problem that mapping isn't correctly executed in Paired-End Mapping was solved.

3.0.11 November 10th, 2014

  1. The Toolbox was changed.
    • "Alignment viewer", "Profile Viewer" were excluded from the Toolbox.
  2. A reference genome sequence registration procedure was changed.
  3. Even if the reference sequence registration processing completed, the bug that a project node isn't updated at once was fixed.
  4. Even if the "Assembly" "Mapping" and "BAM Import" process are completed, the bug that a project node isn't updated at once was fixed.
  5. The bug where the option setting screen of the "Profile Viewer" isn't displayed was fixed.
  6. The bug that the pull-down display items with the qualifier value of "Feature Expression List" can not be chosen was fixed.

3.0.10 November 9th, 2014

  1. Pre-installed DEMO data was subscribed to as the DEMO project.

3.0.09 November 6th, 2014

  1. The bug that the entry sequences can not be specified at the "Fragment" / "Paired-End Mapping" time of the run-designation was fixed.

3.0.08 November 4th, 2014

  1. The bug which the automatic download of the latest version can not execute was fixed.

3.0.07 October 31st, 2014

  1. GBK to GFF conversion tool was implemented.
  2. NITE DOGAN coord file conversion tool was implemented.
  3. The bug where the version information which is displayed in case of boot of the GT launcher isn't displayed correctly was fixed.
  4. The bug which the entry selector from the various tables can not execute correctly was fixed.

3.0.06 October 29th, 2014

  1. The bug which becomes an error at the time of the new node enrollment from the project tree was fixed.
  2. The bug which becomes an error in the execution time of "Export CSV Gene Expression Data" was fixed.

3.0.05 Not Released

3.0.04 October 17th, 2014

  1. This is the correspondence version to Java8.

3.0.03 September 26th, 2014

  1. The change of the node name of "Project" / "Reference" / "Analysis" became possible.

3.0.02 Not Released

3.0.01 September 17th, 2014

  1. The table items selection became of multiple selection.
  2. "Profile Viewer can be directly launched from the "Project Tree".
  3. The selection of the multiple nodes became possible in the project tree.
  4. The selection of the font is implemented.
  5. The bug of version 3.0.00 was fixed.

3.0.00 August 28th, 2014

  1. Main Window became new.
    • Project became a tree structure.
  2. GT Version 2, also, can be separately launched.

3.0


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Last-modified: 2018-05-30 (水) 13:26:08 (415d)